HL_6O3M_168

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

6O3M|1|YA|C|885, 6O3M|1|YA|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O3M_168 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3128

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6O3M|1|YA|C|884
6O3M|1|YA|C|885
6O3M|1|YA|C|886
6O3M|1|YA|A|887
6O3M|1|YA|C|888
6O3M|1|YA|C|889
6O3M|1|YA|A|890
6O3M|1|YA|G|892

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XM

30S ribosomal protein S13

Chain XS

30S ribosomal protein S19