HL_6O3M_177

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O3M_177 not in the Motif Atlas

Homologous match to HL_7RQB_035

Geometric discrepancy: 0.0745

The information below is about HL_7RQB_035

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_87030.2

Basepair signature

cWW-F-F

Number of instances in this motif group

33

Unit IDs

6O3M|1|YA|C|1363
6O3M|1|YA|G|1364
6O3M|1|YA|A|1365
6O3M|1|YA|A|1366
6O3M|1|YA|A|1367
6O3M|1|YA|G|1368

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain Y7

50S ribosomal protein L34