HL_6O8W_010

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

UUGGAAAA

Length

8 nucleotides

Bulged bases

6O8W|1|A|A|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O8W_010 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.2261

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6O8W|1|A|U|342
6O8W|1|A|U|343
6O8W|1|A|G|344
6O8W|1|A|G|345
6O8W|1|A|A|346
6O8W|1|A|A|347
6O8W|1|A|A|348
6O8W|1|A|A|349

Current chains

Chain A

50S subunit

Nearby chains

Chain V

50S ribosomal protein L24