HL_6O8W_012

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

6O8W|1|A|G|366, 6O8W|1|A|A|367, 6O8W|1|A|A|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O8W_012 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.188

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6O8W|1|A|G|364
6O8W|1|A|U|365
6O8W|1|A|G|366
6O8W|1|A|A|367
6O8W|1|A|A|368
6O8W|1|A|A|369
6O8W|1|A|G|370
6O8W|1|A|C|371
6O8W|1|A|C|372

Current chains

Chain A

50S subunit

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24