HL_6O8W_018

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

UUUUGUAGAA

Length

10 nucleotides

Bulged bases

6O8W|1|A|A|611

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O8W_018 not in the Motif Atlas

Homologous match to HL_4WF9_018

Geometric discrepancy: 0.229

The information below is about HL_4WF9_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

6O8W|1|A|U|603
6O8W|1|A|U|604
6O8W|1|A|U|605
6O8W|1|A|U|606
6O8W|1|A|G|607
6O8W|1|A|U|608
6O8W|1|A|A|609
6O8W|1|A|G|610
6O8W|1|A|A|611
6O8W|1|A|A|612

Current chains

Chain A

50S subunit

Nearby chains

Chain D

50S ribosomal protein L3

Chain M

50S ribosomal protein L15

Chain S

50S ribosomal protein L21