HL_6O8W_048

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

6O8W|1|A|A|1927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O8W_048 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.2101

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6O8W|1|A|G|1924
6O8W|1|A|U|1925
6O8W|1|A|A|1926
6O8W|1|A|A|1927
6O8W|1|A|C|1928
6O8W|1|A|U|1929
6O8W|1|A|A|1930
6O8W|1|A|U|1931
6O8W|1|A|A|1932
6O8W|1|A|A|1933
6O8W|1|A|C|1934

Current chains

Chain A

50S subunit

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA