HL_6O8W_061

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

UGUAGUCG

Length

8 nucleotides

Bulged bases

6O8W|1|A|G|2543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O8W_061 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1811

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

6O8W|1|A|U|2542
6O8W|1|A|G|2543
6O8W|1|A|U|2544
6O8W|1|A|A|2545
6O8W|1|A|G|2546
6O8W|1|A|U|2547
6O8W|1|A|C|2548
6O8W|1|A|G|2549

Current chains

Chain A

50S subunit

Nearby chains

Chain 6

50S ribosomal protein L36

Chain G

50S ribosomal protein L6