HL_6O8W_089

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GGUUUCCGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O8W_089 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3803

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

6O8W|1|a|G|854
6O8W|1|a|G|855
6O8W|1|a|U|856
6O8W|1|a|U|857
6O8W|1|a|U|858
6O8W|1|a|C|859
6O8W|1|a|C|860
6O8W|1|a|G|861
6O8W|1|a|C|862
6O8W|1|a|C|863

Current chains

Chain a

16S rRNA

Nearby chains

Chain r

30S ribosomal protein S18