HL_6O8X_012

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

6O8X|1|A|G|366, 6O8X|1|A|A|367, 6O8X|1|A|A|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O8X_012 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1938

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6O8X|1|A|G|364
6O8X|1|A|U|365
6O8X|1|A|G|366
6O8X|1|A|A|367
6O8X|1|A|A|368
6O8X|1|A|A|369
6O8X|1|A|G|370
6O8X|1|A|C|371
6O8X|1|A|C|372

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24