HL_6O8Z_014

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6O8Z|1|A|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O8Z_014 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1523

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6O8Z|1|A|G|450
6O8Z|1|A|G|451
6O8Z|1|A|A|452
6O8Z|1|A|C|453
6O8Z|1|A|C|454
6O8Z|1|A|A|455
6O8Z|1|A|U|456
6O8Z|1|A|C|457

Current chains

Chain A

23S rRNA

Nearby chains