HL_6O8Z_022

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGUAAAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O8Z_022 not in the Motif Atlas

Homologous match to HL_7RQB_022

Geometric discrepancy: 0.2349

The information below is about HL_7RQB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6O8Z|1|A|G|752
6O8Z|1|A|G|753
6O8Z|1|A|U|754
6O8Z|1|A|A|755
6O8Z|1|A|A|756
6O8Z|1|A|A|757
6O8Z|1|A|A|758
6O8Z|1|A|C|759

Current chains

Chain A

23S rRNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain o

30S ribosomal protein S15