HL_6O8Z_027

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UGAUAAGA

Length

8 nucleotides

Bulged bases

6O8Z|1|A|U|998, 6O8Z|1|A|G|1001

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O8Z_027 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1793

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6O8Z|1|A|U|995
6O8Z|1|A|G|996
6O8Z|1|A|A|997
6O8Z|1|A|U|998
6O8Z|1|A|A|999
6O8Z|1|A|A|1000
6O8Z|1|A|G|1001
6O8Z|1|A|A|1002

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain N

50S ribosomal protein L16