HL_6O8Z_055

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6O8Z|1|A|A|2282, 6O8Z|1|A|C|2289

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O8Z_055 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1755

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6O8Z|1|A|C|2278
6O8Z|1|A|U|2279
6O8Z|1|A|A|2280
6O8Z|1|A|A|2281
6O8Z|1|A|A|2282
6O8Z|1|A|A|2283
6O8Z|1|A|G|2284
6O8Z|1|A|G|2285
6O8Z|1|A|U|2286
6O8Z|1|A|A|2287
6O8Z|1|A|A|2288
6O8Z|1|A|C|2289
6O8Z|1|A|G|2290

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27