HL_6O8Z_106

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGUUAGUAACUGAACG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O8Z_106 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3746

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

6O8Z|1|a|C|474
6O8Z|1|a|G|475
6O8Z|1|a|U|476
6O8Z|1|a|U|477
6O8Z|1|a|A|478
6O8Z|1|a|G|479
6O8Z|1|a|U|480
6O8Z|1|a|A|481
6O8Z|1|a|A|482
6O8Z|1|a|C|483
6O8Z|1|a|U|484
6O8Z|1|a|G|485
6O8Z|1|a|A|486
6O8Z|1|a|A|487
6O8Z|1|a|C|488
6O8Z|1|a|G|489

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16