HL_6O9J_018

3D structure

PDB id

6O9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Elongation Competent Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

6O9J|1|B|U|546, 6O9J|1|B|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O9J_018 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.3263

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6O9J|1|B|G|543
6O9J|1|B|C|544
6O9J|1|B|U|545
6O9J|1|B|U|546
6O9J|1|B|A|547
6O9J|1|B|G|548
6O9J|1|B|G|549
6O9J|1|B|C|550

Current chains

Chain B

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain R

50S ribosomal protein L21