HL_6O9J_028

3D structure

PDB id

6O9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Elongation Competent Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

6O9J|1|B|U|958, 6O9J|1|B|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O9J_028 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1472

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6O9J|1|B|U|955
6O9J|1|B|G|956
6O9J|1|B|C|957
6O9J|1|B|U|958
6O9J|1|B|A|959
6O9J|1|B|A|960
6O9J|1|B|C|961
6O9J|1|B|G|962

Current chains

Chain B

23S rRNA

Nearby chains

Chain A

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16