HL_6O9K_026

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

6O9K|1|A|U|958, 6O9K|1|A|C|961

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O9K_026 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1951

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6O9K|1|A|U|955
6O9K|1|A|G|956
6O9K|1|A|C|957
6O9K|1|A|U|958
6O9K|1|A|A|959
6O9K|1|A|A|960
6O9K|1|A|C|961
6O9K|1|A|G|962

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain X

5S ribosomal RNA; 5S rRNA