HL_6O9K_050

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6O9K|1|A|A|2030, 6O9K|1|A|A|2031, 6O9K|1|A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O9K_050 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1534

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6O9K|1|A|G|2027
6O9K|1|A|U|2028
6O9K|1|A|G|2029
6O9K|1|A|A|2030
6O9K|1|A|A|2031
6O9K|1|A|G|2032
6O9K|1|A|A|2033
6O9K|1|A|U|2034
6O9K|1|A|G|2035
6O9K|1|A|C|2036

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L3

Chain 5

50S ribosomal protein L32

Chain R

50S ribosomal protein L21