HL_6O9K_054

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6O9K|1|A|A|2268, 6O9K|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O9K_054 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.1088

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6O9K|1|A|C|2264
6O9K|1|A|U|2265
6O9K|1|A|A|2266
6O9K|1|A|A|2267
6O9K|1|A|A|2268
6O9K|1|A|G|2269
6O9K|1|A|A|2270
6O9K|1|A|G|2271
6O9K|1|A|U|2272
6O9K|1|A|A|2273
6O9K|1|A|A|2274
6O9K|1|A|C|2275
6O9K|1|A|G|2276

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L27

Chain M

50S ribosomal protein L16