HL_6O9K_060

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O9K_060 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.2598

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6O9K|1|A|A|2471
6O9K|1|A|G|2472
6O9K|1|A|U|2473
6O9K|1|A|U|2474
6O9K|1|A|C|2475
6O9K|1|A|A|2476
6O9K|1|A|U|2477
6O9K|1|A|A|2478
6O9K|1|A|U|2479

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L6

Chain M

50S ribosomal protein L16

Chain Y

50S ribosomal protein L36