HL_6O9K_061

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

6O9K|1|A|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O9K_061 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.242

The information below is about HL_7A0S_060

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

6O9K|1|A|U|2528
6O9K|1|A|G|2529
6O9K|1|A|A|2530
6O9K|1|A|A|2531
6O9K|1|A|G|2532
6O9K|1|A|U|2533
6O9K|1|A|A|2534
6O9K|1|A|G|2535

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L6

Chain Y

50S ribosomal protein L36