HL_6O9K_066

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6O9K|1|A|G|2751, 6O9K|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O9K_066 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0975

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6O9K|1|A|C|2745
6O9K|1|A|U|2746
6O9K|1|A|G|2747
6O9K|1|A|A|2748
6O9K|1|A|A|2749
6O9K|1|A|A|2750
6O9K|1|A|G|2751
6O9K|1|A|C|2752
6O9K|1|A|A|2753
6O9K|1|A|U|2754
6O9K|1|A|C|2755
6O9K|1|A|U|2756
6O9K|1|A|A|2757
6O9K|1|A|A|2758
6O9K|1|A|G|2759

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L6

Chain J

50S ribosomal protein L13

Chain Y

50S ribosomal protein L36