HL_6O9K_079

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O9K_079 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1364

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6O9K|1|a|A|320
6O9K|1|a|A|321
6O9K|1|a|C|322
6O9K|1|a|U|323
6O9K|1|a|G|324
6O9K|1|a|A|325
6O9K|1|a|G|326
6O9K|1|a|A|327
6O9K|1|a|C|328
6O9K|1|a|A|329
6O9K|1|a|C|330
6O9K|1|a|G|331
6O9K|1|a|G|332
6O9K|1|a|U|333

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20