HL_6O9K_089

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

6O9K|1|a|U|842, 6O9K|1|a|U|843, 6O9K|1|a|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O9K_089 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3039

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6O9K|1|a|C|840
6O9K|1|a|C|841
6O9K|1|a|U|842
6O9K|1|a|U|843
6O9K|1|a|G|844
6O9K|1|a|A|845
6O9K|1|a|G|846

Current chains

Chain a

16S rRNA

Nearby chains

Chain r

30S ribosomal protein S18