HL_6OD9_004
3D structure
- PDB id
- 6OD9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X-ray free-electron laser
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4.1 Å
Loop
- Sequence
- CGACCGUCUGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OD9_004 not in the Motif Atlas
- Homologous match to HL_4XWF_002
- Geometric discrepancy: 0.2512
- The information below is about HL_4XWF_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36265.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
6OD9|1|B|C|62
6OD9|1|B|G|63
6OD9|1|B|A|64
6OD9|1|B|C|65
6OD9|1|B|C|66
6OD9|1|B|G|67
6OD9|1|B|U|68
6OD9|1|B|C|69
6OD9|1|B|U|70
6OD9|1|B|G|71
6OD9|1|B|G|72
Current chains
- Chain B
- RNA (75-MER)
Nearby chains
- Chain A
- ZMP/ZTP riboswitch
Coloring options: