HL_6OF1_050
3D structure
- PDB id
- 6OF1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 6OF1|1|1A|A|2030, 6OF1|1|1A|A|2031, 6OF1|1|1A|G|2032
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OF1_050 not in the Motif Atlas
- Homologous match to HL_7RQB_050
- Geometric discrepancy: 0.0456
- The information below is about HL_7RQB_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90642.6
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6OF1|1|1A|G|2027
6OF1|1|1A|U|2028
6OF1|1|1A|G|2029
6OF1|1|1A|A|2030
6OF1|1|1A|A|2031
6OF1|1|1A|G|2032
6OF1|1|1A|A|2033
6OF1|1|1A|U|2034
6OF1|1|1A|G|2035
6OF1|1|1A|C|2036
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1E
- 50S ribosomal protein L3
- Chain 1V
- 50S ribosomal protein L21
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