HL_6OF1_074
3D structure
- PDB id
- 6OF1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGGAAACU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OF1_074 not in the Motif Atlas
- Geometric match to HL_6CZR_215
- Geometric discrepancy: 0.1862
- The information below is about HL_6CZR_215
- Detailed Annotation
- GNRA with near cWW
- Broad Annotation
- GNRA with near cWW
- Motif group
- HL_82182.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 21
Unit IDs
6OF1|1|1a|G|157
6OF1|1|1a|G|158
6OF1|1|1a|G|159
6OF1|1|1a|A|160
6OF1|1|1a|A|161
6OF1|1|1a|A|162
6OF1|1|1a|C|163
6OF1|1|1a|U|164
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1T
- 50S ribosomal protein L19
- Chain 1t
- 30S ribosomal protein S20
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