HL_6OF1_204
3D structure
- PDB id
- 6OF1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GAA(M2G)(5MC)AACGC
- Length
- 10 nucleotides
- Bulged bases
- 6OF1|1|2a|A|968, 6OF1|1|2a|G|971
- QA status
- Modified nucleotides: M2G, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OF1_204 not in the Motif Atlas
- Homologous match to HL_4LFB_021
- Geometric discrepancy: 0.0951
- The information below is about HL_4LFB_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6OF1|1|2a|G|963
6OF1|1|2a|A|964
6OF1|1|2a|A|965
6OF1|1|2a|M2G|966
6OF1|1|2a|5MC|967
6OF1|1|2a|A|968
6OF1|1|2a|A|969
6OF1|1|2a|C|970
6OF1|1|2a|G|971
6OF1|1|2a|C|972
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2i
- 30S ribosomal protein S9
- Chain 2j
- 30S ribosomal protein S10
- Chain 2m
- 30S ribosomal protein S13
- Chain 2w
- Transfer RNA; tRNA
- Chain 2x
- Transfer RNA; tRNA
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