HL_6OF1_223
3D structure
- PDB id
- 6OF1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CCU(CM0)AC(6MZ)AG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: CM0, 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OF1_223 not in the Motif Atlas
- Homologous match to HL_4V8N_144
- Geometric discrepancy: 0.3356
- The information below is about HL_4V8N_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OF1|1|2y|C|31
6OF1|1|2y|C|32
6OF1|1|2y|U|33
6OF1|1|2y|CM0|34
6OF1|1|2y|A|35
6OF1|1|2y|C|36
6OF1|1|2y|6MZ|37
6OF1|1|2y|A|38
6OF1|1|2y|G|39
Current chains
- Chain 2y
- A-site and E-site tRNAs
Nearby chains
- Chain 2a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2g
- 30S ribosomal protein S7
- Chain 2k
- 30S ribosomal protein S11
- Chain 2v
- mRNA
- Chain 2x
- Transfer RNA; tRNA
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