3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GUGAAAGCC
Length
9 nucleotides
Bulged bases
6OF6|1|RA|G|329
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OF6_053 not in the Motif Atlas
Homologous match to HL_5J7L_144
Geometric discrepancy: 0.0864
The information below is about HL_5J7L_144
Detailed Annotation
T-loop with unstacked turn
Broad Annotation
T-loop
Motif group
HL_27670.2
Basepair signature
cWW-tWH-F-F
Number of instances in this motif group
13

Unit IDs

6OF6|1|RA|G|327
6OF6|1|RA|U|328
6OF6|1|RA|G|329
6OF6|1|RA|A|330
6OF6|1|RA|A|331
6OF6|1|RA|A|332
6OF6|1|RA|G|333
6OF6|1|RA|C|334
6OF6|1|RA|C|335

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RF
50S ribosomal protein L4
Chain RY
50S ribosomal protein L24

Coloring options:


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