HL_6OF6_120

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OF6_120 not in the Motif Atlas

Homologous match to HL_5J7L_007

Geometric discrepancy: 0.0773

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6OF6|1|XA|U|296
6OF6|1|XA|G|297
6OF6|1|XA|A|298
6OF6|1|XA|G|299
6OF6|1|XA|A|300
6OF6|1|XA|G|301

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XE

30S ribosomal protein S5

Chain XL

30S ribosomal protein S12

Chain XQ

30S ribosomal protein S17