HL_6OF6_206

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

6OF6|1|YA|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OF6_206 not in the Motif Atlas

Homologous match to HL_9DFE_050

Geometric discrepancy: 0.5856

The information below is about HL_9DFE_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.4

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

6OF6|1|YA|C|2209
6OF6|1|YA|G|2210
6OF6|1|YA|G|2211
6OF6|1|YA|A|2212
6OF6|1|YA|U|2213
6OF6|1|YA|G|2215

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YD

50S ribosomal protein L2

Chain YI

50S ribosomal protein L9