HL_6OF6_209

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

6OF6|1|YA|A|2309, 6OF6|1|YA|A|2310

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OF6_209 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.3342

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6OF6|1|YA|G|2303
6OF6|1|YA|G|2304
6OF6|1|YA|A|2305
6OF6|1|YA|C|2306
6OF6|1|YA|G|2307
6OF6|1|YA|G|2308
6OF6|1|YA|A|2309
6OF6|1|YA|A|2310
6OF6|1|YA|A|2311
6OF6|1|YA|U|2312
6OF6|1|YA|C|2313

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YB

5S ribosomal RNA; 5S rRNA

Chain YG

50S ribosomal protein L5