HL_6OFX_010

3D structure

PDB id

6OFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

6OFX|1|1|G|329, 6OFX|1|1|A|330, 6OFX|1|1|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OFX_010 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1242

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6OFX|1|1|G|327
6OFX|1|1|U|328
6OFX|1|1|G|329
6OFX|1|1|A|330
6OFX|1|1|C|331
6OFX|1|1|A|332
6OFX|1|1|G|333
6OFX|1|1|C|334
6OFX|1|1|C|335

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24