HL_6OFX_035

3D structure

PDB id

6OFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6OFX|1|1|A|1453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OFX_035 not in the Motif Atlas

Geometric match to HL_5U30_001

Geometric discrepancy: 0.2534

The information below is about HL_5U30_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6OFX|1|1|C|1451
6OFX|1|1|G|1452
6OFX|1|1|A|1453
6OFX|1|1|C|1454
6OFX|1|1|G|1455
6OFX|1|1|G|1456
6OFX|1|1|U|1457
6OFX|1|1|U|1458
6OFX|1|1|G|1459

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain n

50S ribosomal protein L17