HL_6OFX_047

3D structure

PDB id

6OFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

6OFX|1|1|A|1913, 6OFX|1|1|C|1914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OFX_047 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.4062

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

6OFX|1|1|G|1910
6OFX|1|1|U|1911
6OFX|1|1|A|1912
6OFX|1|1|A|1913
6OFX|1|1|C|1914
6OFX|1|1|U|1915
6OFX|1|1|A|1916
6OFX|1|1|U|1917
6OFX|1|1|A|1918
6OFX|1|1|A|1919
6OFX|1|1|C|1920

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA