HL_6OFX_065

3D structure

PDB id

6OFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6OFX|1|1|G|2751

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OFX_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1448

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6OFX|1|1|C|2745
6OFX|1|1|U|2746
6OFX|1|1|G|2747
6OFX|1|1|A|2748
6OFX|1|1|A|2749
6OFX|1|1|A|2750
6OFX|1|1|G|2751
6OFX|1|1|C|2752
6OFX|1|1|A|2753
6OFX|1|1|U|2754
6OFX|1|1|C|2755
6OFX|1|1|U|2756
6OFX|1|1|A|2757
6OFX|1|1|A|2758
6OFX|1|1|G|2759

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6

Chain j

50S ribosomal protein L13