HL_6OG7_024

3D structure

PDB id

6OG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCAUCCCGA

Length

9 nucleotides

Bulged bases

6OG7|1|1|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OG7_024 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.1589

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6OG7|1|1|U|884
6OG7|1|1|C|885
6OG7|1|1|A|886
6OG7|1|1|U|887
6OG7|1|1|C|888
6OG7|1|1|C|889
6OG7|1|1|C|890
6OG7|1|1|G|891
6OG7|1|1|A|892

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain R

30S ribosomal protein S13

Chain e

50S ribosomal protein L5