3D structure

PDB id
6OG7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GAUGCAACGC
Length
10 nucleotides
Bulged bases
6OG7|1|3|G|971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OG7_091 not in the Motif Atlas
Homologous match to HL_5J7L_021
Geometric discrepancy: 0.3089
The information below is about HL_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50779.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6OG7|1|3|G|963
6OG7|1|3|A|964
6OG7|1|3|U|965
6OG7|1|3|G|966
6OG7|1|3|C|967
6OG7|1|3|A|968
6OG7|1|3|A|969
6OG7|1|3|C|970
6OG7|1|3|G|971
6OG7|1|3|C|972

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain 5
Transfer RNA; tRNA
Chain 8
Peptide chain release factor RF2
Chain N
30S ribosomal protein S9
Chain O
30S ribosomal protein S10
Chain R
30S ribosomal protein S13
Chain S
30S ribosomal protein S14

Coloring options:


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