HL_6OGF_028

3D structure

PDB id

6OGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGF_028 not in the Motif Atlas

Homologous match to HL_7A0S_029

Geometric discrepancy: 0.5049

The information below is about HL_7A0S_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6OGF|1|1|C|1092
6OGF|1|1|G|1093
6OGF|1|1|U|1094
6OGF|1|1|A|1095
6OGF|1|1|A|1096
6OGF|1|1|U|1097
6OGF|1|1|A|1098
6OGF|1|1|G|1099

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 8

Peptide chain release factor 2

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6