HL_6OGF_102
3D structure
- PDB id
- 6OGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 6OGF|1|5|C|16, 6OGF|1|5|G|18, 6OGF|1|5|G|19, 6OGF|1|5|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OGF_102 not in the Motif Atlas
- Homologous match to HL_4TUE_033
- Geometric discrepancy: 0.2087
- The information below is about HL_4TUE_033
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_93616.2
- Basepair signature
- cWW-cWS-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6OGF|1|5|C|13
6OGF|1|5|A|14
6OGF|1|5|G|15
6OGF|1|5|C|16
6OGF|1|5|C|17
6OGF|1|5|U|17|||A
6OGF|1|5|G|18
6OGF|1|5|G|19
6OGF|1|5|U|20
6OGF|1|5|A|21
6OGF|1|5|G|22
Current chains
- Chain 5
- tRNAfMet
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
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