HL_6OGF_104

3D structure

PDB id

6OGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

6OGF|1|5|C|56

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGF_104 not in the Motif Atlas

Homologous match to HL_4YCP_003

Geometric discrepancy: 0.2676

The information below is about HL_4YCP_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

6OGF|1|5|G|53
6OGF|1|5|U|54
6OGF|1|5|U|55
6OGF|1|5|C|56
6OGF|1|5|A|57
6OGF|1|5|A|58
6OGF|1|5|A|59
6OGF|1|5|U|60
6OGF|1|5|C|61

Current chains

Chain 5

tRNAfMet

Nearby chains

Chain e

50S ribosomal protein L5