HL_6OGG_011

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6OGG|1|1|G|386, 6OGG|1|1|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGG_011 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.4796

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6OGG|1|1|A|382
6OGG|1|1|C|383
6OGG|1|1|A|384
6OGG|1|1|C|385
6OGG|1|1|G|386
6OGG|1|1|U|387
6OGG|1|1|G|388
6OGG|1|1|G|389
6OGG|1|1|U|390
6OGG|1|1|A|391
6OGG|1|1|U|392

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain x

50S ribosomal protein L28