RNA 3D Hub //

6OGG Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6OGG_0031/1/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.6
HL_6OGG_0111/1/382:392No text annotation
homologous
HL_7A0S_013
HL_91503.8
HL_6OGG_0211/1/744:753No text annotation
homologous
HL_4WF9_023
HL_50204.1
HL_6OGG_0441/1/1777:1787No text annotation
homologous
HL_7RQB_045
NA
HL_6OGG_0491/1/2027:2036No text annotation
homologous
HL_7RQB_050
NA
HL_6OGG_0521/1/2248:2256No text annotation
homologous
HL_7RQB_053
NA
HL_6OGG_0531/1/2264:2276No text annotation
homologous
HL_4WF9_050
HL_02042.1
HL_6OGG_0621/1/2594:2599GNRA
homologous
HL_7RQB_063
NA
HL_6OGG_0671/1/2819:2827No text annotation
homologous
HL_5J7L_201
NA

Problematic loops

#loop idProblemSequence
HL_6OGG_001Pseudoknot geometry
HL_6OGG_002No text annotation
HL_6OGG_004No text annotation
HL_6OGG_005No text annotation
HL_6OGG_105No text annotation
HL_6OGG_006No text annotation
HL_6OGG_007No text annotation
HL_6OGG_008No text annotation
HL_6OGG_009No text annotation
HL_6OGG_010T-loop with unstacked turn
HL_6OGG_012Pseudoknot geometry
HL_6OGG_013GNRA
HL_6OGG_014GNRA
HL_6OGG_015No text annotation
HL_6OGG_016T-loop with 2 stacked bulged bases
HL_6OGG_017No text annotation
HL_6OGG_018GNRA
HL_6OGG_019No text annotation
HL_6OGG_106No text annotation
HL_6OGG_020No text annotation
HL_6OGG_022No text annotation
HL_6OGG_112No text annotation
HL_6OGG_023No text annotation
HL_6OGG_024No text annotation
HL_6OGG_025GNRA
HL_6OGG_026No text annotation
HL_6OGG_027Externally structured
HL_6OGG_028Externally structured
HL_6OGG_029No text annotation
HL_6OGG_030GNRA
HL_6OGG_031T-loop with 2 stacked bulged bases
HL_6OGG_032Pseudoknot geometry with 3' bulge
HL_6OGG_033GNRA
HL_6OGG_034No text annotation
HL_6OGG_035Externally structured
HL_6OGG_036No text annotation
HL_6OGG_037No text annotation
HL_6OGG_038No text annotation
HL_6OGG_039No text annotation
HL_6OGG_040GNRA
HL_6OGG_041UNCG
HL_6OGG_042No text annotation
HL_6OGG_043No text annotation
HL_6OGG_045GNRA related
HL_6OGG_046No text annotation
HL_6OGG_047No text annotation
HL_6OGG_048No text annotation
HL_6OGG_050No text annotation
HL_6OGG_051No text annotation
HL_6OGG_054No text annotation
HL_6OGG_055Pseudoknot geometry
HL_6OGG_056GNRA
HL_6OGG_057GNRA
HL_6OGG_058No text annotation
HL_6OGG_059No text annotation
HL_6OGG_107No text annotation
HL_6OGG_060GNRA variation
HL_6OGG_061No text annotation
HL_6OGG_063No text annotation
HL_6OGG_064No text annotation
HL_6OGG_108Ribsomal LSU H95
HL_6OGG_065No text annotation
HL_6OGG_066No text annotation
HL_6OGG_068GNRA
HL_6OGG_069No text annotation
HL_6OGG_070Mini UNCG
HL_6OGG_071No text annotation
HL_6OGG_072No text annotation
HL_6OGG_073GNRA
HL_6OGG_074GNRA
HL_6OGG_075No text annotation
HL_6OGG_076GNRA related
HL_6OGG_077No text annotation
HL_6OGG_109GNRA
HL_6OGG_078No text annotation
HL_6OGG_079UNCG
HL_6OGG_080GNRA
HL_6OGG_081No text annotation
HL_6OGG_082GNRA wlth extra near cWW
HL_6OGG_083No text annotation
HL_6OGG_084No text annotation
HL_6OGG_085No text annotation
HL_6OGG_086GNRA
HL_6OGG_087No text annotation
HL_6OGG_088No text annotation
HL_6OGG_089GNRA
HL_6OGG_090GNRA
HL_6OGG_091No text annotation
HL_6OGG_092No text annotation
HL_6OGG_110GNRA
HL_6OGG_111tRNA anticodon loop
HL_6OGG_093GNRA
HL_6OGG_094T-loop related
HL_6OGG_095No text annotation
HL_6OGG_096GNRA
HL_6OGG_097GNRA
HL_6OGG_098T-loop with 3 stacked bulged bases
HL_6OGG_099No text annotation
HL_6OGG_100UNCG
HL_6OGG_101GNRA
HL_6OGG_102tRNA D-loop
HL_6OGG_103tRNA anticodon loop
HL_6OGG_104T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6OGG_0061/1/188:194,
1/1/201:208		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_250
NA
IL_6OGG_0161/1/674:678,
1/1/799:806		tHW-tHW cross-strand stack
homologous
IL_7RQB_018
NA
IL_6OGG_0211/1/775:777,
1/1/787:791		Multiple bulged bases
geometric
IL_4V9F_030
IL_57881.1
IL_6OGG_0271/1/864:868,
1/1/909:912		C-loop with bulged stacked A's
homologous
IL_5J7L_272
NA
IL_6OGG_0441/1/1208:1215,
1/1/1234:1238		Kink-turn
homologous
IL_7RQB_047
NA
IL_6OGG_0461/1/1310:1313,
1/1/1603:1604		Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_6OGG_0471/1/1319:1323,
1/1/1331:1333		C-loop
homologous
IL_5J7L_291
NA
IL_6OGG_0601/1/1663:1665,
1/1/1995:1997		Isolated tWW turn
homologous
IL_5J7L_305
NA
IL_6OGG_1111/3/47:52,
1/3/359:361		No text annotation
homologous
IL_5J7L_003
NA

Problematic loops

#loop idProblemSequence
IL_6OGG_001Triple sheared with non-canonical cWW
IL_6OGG_002Single bulged A
IL_6OGG_003Minor groove platform
IL_6OGG_004Kink-turn
IL_6OGG_005Single stack bend
IL_6OGG_0077x6 Sarcin-Ricin; G-bulge
IL_6OGG_008No text annotation
IL_6OGG_196No text annotation
IL_6OGG_173No text annotation
IL_6OGG_009No text annotation
IL_6OGG_010No text annotation
IL_6OGG_011No text annotation
IL_6OGG_012Double sheared
IL_6OGG_013Isolated non-canonical cWW pair
IL_6OGG_014AAA cross-strand stack
IL_6OGG_015Isolated non-canonical cWW pair
IL_6OGG_017Single bulged A
IL_6OGG_018Single bulged G
IL_6OGG_019Triple sheared
IL_6OGG_020Major groove platform
IL_6OGG_02290 degree turn
IL_6OGG_023Multiple bulged bases
IL_6OGG_024Single stack bend
IL_6OGG_0257x7 Sarcin-Ricin with intercalated A; G-bulge
IL_6OGG_026Minor groove platform
IL_6OGG_174No text annotation
IL_6OGG_028Isolated non-canonical cWW pair
IL_6OGG_029No text annotation
IL_6OGG_030No text annotation
IL_6OGG_031Single bulged C
IL_6OGG_032UAA/GAN
IL_6OGG_033SSU/LSU pseudoknot
IL_6OGG_034Single bulged U
IL_6OGG_035No text annotation
IL_6OGG_175Kink-turn related
IL_6OGG_036No text annotation
IL_6OGG_037Isolated non-canonical cWW pair
IL_6OGG_038Tandem non-canonical cWW pairs
IL_6OGG_176No text annotation
IL_6OGG_039No text annotation
IL_6OGG_040No text annotation
IL_6OGG_041No text annotation
IL_6OGG_042Isolated cWS basepair
IL_6OGG_043No text annotation
IL_6OGG_0458x7 Sarcin-Ricin; G-bulge
IL_6OGG_048UAA/GAN
IL_6OGG_049tSH-tHW-tHS
IL_6OGG_050No text annotation
IL_6OGG_051UAA/GAN
IL_6OGG_052Tandem non-canonical cWW pairs
IL_6OGG_053tSH-tHW
IL_6OGG_054No text annotation
IL_6OGG_055No text annotation
IL_6OGG_177No text annotation
IL_6OGG_056No text annotation
IL_6OGG_178No text annotation
IL_6OGG_057Single bulged A
IL_6OGG_179UAA/GAN variation
IL_6OGG_058Triple sheared related
IL_6OGG_059No text annotation
IL_6OGG_061Major groove platform; stack outside cWW
IL_6OGG_180No text annotation
IL_6OGG_062Intercalated tWH
IL_6OGG_063tSH-tSH-tHH-tHS
IL_6OGG_0646x5 Sarcin-Ricin; G-bulge
IL_6OGG_065No text annotation
IL_6OGG_066Single bulged A
IL_6OGG_067Kink-turn related
IL_6OGG_068Minor groove platform, major groove intercalation
IL_6OGG_069Major groove intercalation
IL_6OGG_070No text annotation
IL_6OGG_181No text annotation
IL_6OGG_071UAA/GAN variation
IL_6OGG_072Bulged stacked bases
IL_6OGG_073No text annotation
IL_6OGG_074Major groove platform
IL_6OGG_075No text annotation
IL_6OGG_076Single bulged U
IL_6OGG_182Minor groove platform
IL_6OGG_077No text annotation
IL_6OGG_078Isolated tHS basepair with bulges
IL_6OGG_079Isolated non-canonical cWW pair
IL_6OGG_183No text annotation
IL_6OGG_080Kink-turn related
IL_6OGG_184No text annotation
IL_6OGG_081No text annotation
IL_6OGG_082Single bulged U
IL_6OGG_083Double sheared
IL_6OGG_084No text annotation
IL_6OGG_085Major groove platform
IL_6OGG_086Major groove platform with extra pair
IL_6OGG_185No text annotation
IL_6OGG_087No text annotation
IL_6OGG_088Double sheared with non-canonical cWW
IL_6OGG_089Isolated non-canonical cWW with bulges
IL_6OGG_090Isolated non-canonical cWW with bulges
IL_6OGG_091No text annotation
IL_6OGG_092Major groove platform with intercalation
IL_6OGG_093Isolated non-canonical cWW pair
IL_6OGG_094No text annotation
IL_6OGG_095tSH-tHS-tHW
IL_6OGG_096Sarcin-Ricin target in LSU H95; G-bulge
IL_6OGG_097C-loop
IL_6OGG_098UAA/GAN related, with intercalation
IL_6OGG_099Multiple bulged bases
IL_6OGG_100UAA/GAN with extra cWW
IL_6OGG_101No text annotation
IL_6OGG_102Single bulged C
IL_6OGG_103Multiple bulged bases with non-canonical cWW
IL_6OGG_104tHS double platform
IL_6OGG_186Major groove intercalation
IL_6OGG_105Isolated non-canonical cWW with bulges
IL_6OGG_106No text annotation
IL_6OGG_107Major groove minor groove platform; mini C-loop
IL_6OGG_108Bacterial 5S Loop E
IL_6OGG_109Single bulged G
IL_6OGG_110Single bulged A
IL_6OGG_112Minor groove platform
IL_6OGG_113Multiple bulged bases
IL_6OGG_114Minor groove platform with extra cWW
IL_6OGG_115Minor groove platform, major groove intercalation
IL_6OGG_116Isolated non-canonical cWW pair
IL_6OGG_117No text annotation
IL_6OGG_118Isolated cWH basepair
IL_6OGG_119tWH-tWH-tHW-tHW
IL_6OGG_120Minor groove platform
IL_6OGG_121Kink-turn with non-sequential stacking
IL_6OGG_197No text annotation
IL_6OGG_122No text annotation
IL_6OGG_123C-loop
IL_6OGG_124Single bulged U
IL_6OGG_125C-loop
IL_6OGG_126Single bulged G
IL_6OGG_198No text annotation
IL_6OGG_127No text annotation
IL_6OGG_128No text annotation
IL_6OGG_129tSH-tHW-tWW
IL_6OGG_130No text annotation
IL_6OGG_131SSU/LSU pseudoknot
IL_6OGG_132Kink-turn related
IL_6OGG_133No text annotation
IL_6OGG_134tSH-tHW-tHS
IL_6OGG_135Other IL
IL_6OGG_187Major groove platform
IL_6OGG_188Major groove minor groove platform; mini C-loop
IL_6OGG_136No text annotation
IL_6OGG_137No text annotation
IL_6OGG_138Major groove platform; stack outside cWW
IL_6OGG_139Single stack bend
IL_6OGG_189Tandem non-canonical cWW pairs
IL_6OGG_140No text annotation
IL_6OGG_141Kink-turn
IL_6OGG_199Left turn
IL_6OGG_142No text annotation
IL_6OGG_143tSH-tHW-tHS
IL_6OGG_1448x6 Sarcin-Ricin with inserted Y; G-bulge
IL_6OGG_145Single bulged A
IL_6OGG_146Single bulged G
IL_6OGG_190Minor groove platform
IL_6OGG_147No text annotation
IL_6OGG_148No text annotation
IL_6OGG_149Minor groove platform
IL_6OGG_150Single stack bend
IL_6OGG_191No text annotation
IL_6OGG_151No text annotation
IL_6OGG_152Single bulged U
IL_6OGG_153tSH-tHW
IL_6OGG_192No text annotation
IL_6OGG_193Minor groove platform
IL_6OGG_154No text annotation
IL_6OGG_155Single bulged U
IL_6OGG_156Isolated non-canonical cWW pair
IL_6OGG_157No text annotation
IL_6OGG_158Minor groove platform
IL_6OGG_159No text annotation
IL_6OGG_160No text annotation
IL_6OGG_194No text annotation
IL_6OGG_161180 degree turn
IL_6OGG_162Double sheared with non-canonical cWW
IL_6OGG_163No text annotation
IL_6OGG_164No text annotation
IL_6OGG_165No text annotation
IL_6OGG_166Isolated non-canonical cWW pair
IL_6OGG_167Decoding loop related
IL_6OGG_195Isolated non-canonical cWW pair
IL_6OGG_168Tandem non-canonical cWW pairs
IL_6OGG_169Double sheared
IL_6OGG_170Triple sheared related
IL_6OGG_171Single bulged A
IL_6OGG_172No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6OGG_0021/1/56:57,
1/1/70:76,
1/1/110:114		No text annotation
homologous
J3_5J7L_037
NA
J3_6OGG_0271/1/297:301,
1/1/316:325,
1/1/337:341		No text annotation
homologous
J3_5J7L_068
NA
J3_6OGG_0031/1/683:689,
1/1/773:775,
1/1/791:794		No text annotation
homologous
J3_7RQB_004
NA
J3_6OGG_0071/1/1306:1309,
1/1/1605:1611,
1/1/1620:1622		No text annotation
homologous
J3_7A0S_007
J3_47341.1
J3_6OGG_0081/1/1344:1349,
1/1/1382:1385,
1/1/1402:1403		No text annotation
homologous
J3_5J7L_043
NA
J3_6OGG_0321/3/46:52,
1/3/359:367,
1/3/393:395		No text annotation
homologous
J3_6CZR_058
NA
J4_6OGG_0041/1/1310:1314,
1/1/1338:1343,
1/1/1404:1405,
1/1/1597:1604		No text annotation
homologous
J4_5J7L_022
NA
J5_6OGG_0031/1/584:589,
1/1/668:671,
1/1/809:812,
1/1/1195:1196,
1/1/1250:1256		No text annotation
homologous
J5_5J7L_015
NA
J5_6OGG_0051/1/2057:2064,
1/1/2446:2454,
1/1/2498:2507,
1/1/2582:2588,
1/1/2606:2611		No text annotation
J7_6OGG_0011/1/8:15,
1/1/525:531,
1/1/2018:2023,
1/1/2040:2043,
1/1/2625:2630,
1/1/2788:2789,
1/1/2894:2895		No text annotation
J7_6OGG_0021/1/817:822,
1/1/835:838,
1/1/940:946,
1/1/971:976,
1/1/987:991,
1/1/1163:1164,
1/1/1185:1190		No text annotation

Problematic loops

#loop idProblemSequence
J3_6OGG_001No text annotation
J3_6OGG_025No text annotation
J3_6OGG_026No text annotation
J3_6OGG_004No text annotation
J3_6OGG_005No text annotation
J3_6OGG_006No text annotation
J3_6OGG_028No text annotation
J3_6OGG_009Kink-turn 3-way junction
J3_6OGG_029No text annotation
J3_6OGG_010No text annotation
J3_6OGG_030No text annotation
J3_6OGG_011No text annotation
J3_6OGG_012No text annotation
J3_6OGG_031No text annotation
J3_6OGG_013No text annotation
J3_6OGG_014No text annotation
J3_6OGG_015No text annotation
J3_6OGG_016No text annotation
J3_6OGG_033No text annotation
J3_6OGG_034No text annotation
J3_6OGG_017No text annotation
J3_6OGG_035No text annotation
J3_6OGG_018No text annotation
J3_6OGG_019No text annotation
J3_6OGG_020No text annotation
J3_6OGG_036No text annotation
J3_6OGG_021No text annotation
J3_6OGG_022No text annotation
J3_6OGG_023No text annotation
J3_6OGG_037No text annotation
J3_6OGG_038No text annotation
J3_6OGG_024No text annotation
J4_6OGG_001No text annotation
J4_6OGG_002No text annotation
J4_6OGG_003No text annotation
J4_6OGG_005No text annotation
J4_6OGG_006No text annotation
J4_6OGG_007No text annotation
J4_6OGG_008No text annotation
J4_6OGG_009No text annotation
J4_6OGG_010No text annotation
J4_6OGG_011No text annotation
J4_6OGG_012No text annotation
J4_6OGG_013No text annotation
J4_6OGG_014No text annotation
J5_6OGG_001No text annotation
J5_6OGG_002No text annotation
J5_6OGG_004No text annotation
J5_6OGG_006No text annotation
J5_6OGG_007No text annotation
J5_6OGG_008No text annotation
J5_6OGG_009No text annotation
J6_6OGG_001No text annotation

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