HL_6OGG_016
3D structure
- PDB id
- 6OGG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases
- 6OGG|1|1|A|574
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OGG_016 not in the Motif Atlas
- Geometric match to HL_7A0S_018
- Geometric discrepancy: 0.3006
- The information below is about HL_7A0S_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
6OGG|1|1|U|566
6OGG|1|1|U|567
6OGG|1|1|U|568
6OGG|1|1|U|569
6OGG|1|1|G|570
6OGG|1|1|U|571
6OGG|1|1|A|572
6OGG|1|1|U|573
6OGG|1|1|A|574
6OGG|1|1|A|575
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain c
- 50S ribosomal protein L3
- Chain l
- 50S ribosomal protein L15
- Chain q
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L21
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