HL_6OGG_021

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UGUCGAAAAA

Length

10 nucleotides

Bulged bases

6OGG|1|1|C|747, 6OGG|1|1|A|751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGG_021 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.229

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6OGG|1|1|U|744
6OGG|1|1|G|745
6OGG|1|1|U|746
6OGG|1|1|C|747
6OGG|1|1|G|748
6OGG|1|1|A|749
6OGG|1|1|A|750
6OGG|1|1|A|751
6OGG|1|1|A|752
6OGG|1|1|A|753

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L32

Chain D

50S ribosomal protein L34

Chain c

50S ribosomal protein L3

Chain s

50S ribosomal protein L22