HL_6OGG_024

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUCAUCCCGAC

Length

11 nucleotides

Bulged bases

6OGG|1|1|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGG_024 not in the Motif Atlas

Homologous match to HL_5J7L_158

Geometric discrepancy: 0.4432

The information below is about HL_5J7L_158

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OGG|1|1|G|883
6OGG|1|1|U|884
6OGG|1|1|C|885
6OGG|1|1|A|886
6OGG|1|1|U|887
6OGG|1|1|C|888
6OGG|1|1|C|889
6OGG|1|1|C|890
6OGG|1|1|G|891
6OGG|1|1|A|892
6OGG|1|1|C|893

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L5