3D structure

PDB id
6OGG (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CUACGG
Length
6 nucleotides
Bulged bases
6OGG|1|1|A|1535, 6OGG|1|1|C|1536, 6OGG|1|1|G|1537
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OGG_037 not in the Motif Atlas
Geometric match to HL_7RQB_011
Geometric discrepancy: 0.399
The information below is about HL_7RQB_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_70546.1
Basepair signature
cWW-F
Number of instances in this motif group
18

Unit IDs

6OGG|1|1|C|1533
6OGG|1|1|U|1534
6OGG|1|1|A|1535
6OGG|1|1|C|1536
6OGG|1|1|G|1537
6OGG|1|1|G|1538

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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