HL_6OGG_042

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

6OGG|1|1|C|1728, 6OGG|1|1|U|1729, 6OGG|1|1|C|1730, 6OGG|1|1|G|1731, 6OGG|1|1|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGG_042 not in the Motif Atlas

Homologous match to HL_7A0S_043

Geometric discrepancy: 0.5013

The information below is about HL_7A0S_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OGG|1|1|C|1727
6OGG|1|1|C|1728
6OGG|1|1|U|1729
6OGG|1|1|C|1730
6OGG|1|1|G|1731
6OGG|1|1|C|1732
6OGG|1|1|G|1733

Current chains

Chain 1

23S ribosomal RNA

Nearby chains