HL_6OGG_082

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

6OGG|1|3|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGG_082 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.264

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6OGG|1|3|G|462
6OGG|1|3|U|463
6OGG|1|3|U|464
6OGG|1|3|A|465
6OGG|1|3|A|466
6OGG|1|3|U|467
6OGG|1|3|A|468
6OGG|1|3|C|469
6OGG|1|3|C|470

Current chains

Chain 3

16S ribosomal RNA

Nearby chains